Confirm that tidyverse installed, or at least necessary packages, possibly not dependencies ‘googledrive’, ‘googlesheets4’, ‘httr’, ‘rvest’
Would be good to have a relatively-quick unilevel test for the supercomputer. Try not_multilevel_model_recovery.qmd as it at least only takes several hours on laptop.
Practice github clone
Install Quarto so can keep using qmd files? wget https://quarto.org/download/latest/quarto-linux-amd64.deb sudo dpkg -i quarto-linux-amd64.deb
More recent notes are kept in running chronological fashion at
https://docs.google.com/document/d/1Wog1e4CcYBrW1OuwutBn_uUY_tbyIsn6zITwDl2Fp3A/
ssh ha3155@gadi.nci.org.au
See R
ls /apps/R/4.5.0
README in that directory (“more /apps/R/4.5.0/README.nci”) says to execute the following probably to access packages:
module load intel-compiler-llvm/2025.0.4 module load intel-mkl/2025.0.1
Running module list shows that those loaded
https://sydneyuni.atlassian.net/wiki/spaces/RC/pages/3448733944/Sydney+Scheme
Install them locally and then transfer with some kind of login script?. He seemed to say there was instructions at opus.nci.org.au
But I can’t find anything, so I need to email: nci-sydney.scheme@sydney.edu.au
Some packages only compile using gcc. Modify ~/.R/Makevars with C and CXX flags as below to force compilation using gc c.
CXX=g++ CXX11=g++ CXX14=g++ CXX17=g++ CC=gcc
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